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The University of Tennessee

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Priya Ranjan

pranjan@utk.edu Priya Ranjan

CV

EDUCATION

Ph.D. in Forest Molecular Genetics and Biotechnology (Bioinformatics) Michigan Technological University, Houghton, MI, 2006

M.S. in Biotechnology Indian Institute of Technology (IIT Bombay), Mumbai, India, 2001

B.S. in Chemistry with Honors TM Bhagalpur University, Bhagalpur, India, 1999

Research interests

I am interested in Genome / transcriptome sequencing using next generation sequencing technologies. I am also interested in the identification of conserved cis-elements in co-expressed genes and its use in creating designer promoter. I am interested in developing and using bioinformatics tools to answer biologically relevant questions.

  • Bioinformatics
  • Comparative genomics
  • Gene annotation
  • Molecular evolution
  • Statistical genetics
  • Alternative splicing
  • Next generation sequencing

PUBLICATIONS

  1. Yin, T.-M., M. Davis, L. Gunter, X. Zhang, P. Ranjan, R. Sykes, and GA. Tuskan. 2010. Differential expression of genetic loci underlying above- and below-ground lignin contents in Populus. PLOS Genetics In review.
  2. Ranjan P, Yin T, Zhang X, Kalluri U C, Yang X, Jawdy S, Tuskan G A Bioinformatics-based identification of candidate genes from QTLs associated with cell wall traits in Populus, BioEnergy Research 2009 DOI 10.1007/s12155-009-9060-z
  3. Yuan Y, Chung J-D, Fu X, Johnson VE, Ranjan P, Booth SL, Harding SA, Tsai C-J: Alternative splicing and gene duplication differentially shaped the regulation of isochorismate synthase in Populus and Arabidopsis. Proceedings of the National Academy of Sciences USA 2009, 106:22020-22025.
  4. Yuan J, Halfhill M, Abercrombie L, Rao M, Zhou X, .. Ranjan P et al. (2009) Functional genomics analysis of Conyza canadensis (horseweed) with special reference to the evolution of non-target site glyphosate resistance. Weed Science: In Press
  5. Udaya Kalluri, Gregory Hurst, Patricia Lankford, Priya Ranjan, Dale Pelletier. Shotgun proteome profile of Populus developing xylem. Proteomics. 2009 (21):4871-80.
  6. Rao, M.R.,M.D. Halfhill, L.G Abercrombie, P. Ranjan, J.M. Abercrombie, J.S. Gouffon, A.M. Saxton, and C.N. Stewart,Jr. 2009. Phytoremediation and phytosensing of chemical contaminants, RDX and TNT:identification of the required target genes. Functional and Integrative Genomics DOI 10.1007/s10142-009-0125-z.
  7. Xiaohan Yang , Udaya C. Kalluri , Sara Jawdy , Lee E. Gunter , Tongming Yin , Timothy J. Tschaplinski , David J. Weston , Priya Ranjan , and Gerald A. Tuskan. F-box Gene Family is Expanded in Herbaceous Annual Plants Relative to Woody Perennial Plants. Plant Physiol. First published on September 5, 2008; 10.1104/pp.108.121921
  8. Jason M Abercrombie, Matthew D Halfhill, Priya Ranjan, Murali R Rao, Arnold M Saxton, Joshua S Yuan and C Neal Stewart Jr: Transcriptional responses of Arabidopsis thaliana plants to As (V) stress. BMC Plant Biology 2008, 8:87
  9. Ranjan P, Kao Y, Jiang H, C.P. Joshi, S.A. Harding and C.J. Tsai: Suppression Subtractive hybridization-mediated transcriptome analysis from multiple tissues of aspen (Populus tremuloides) trees altered in phenylpropanoid metabolism. Planta, 219: 694-704, 2004.
  10. C.P. Joshi, S. Bhandari, P. Ranjan, U. C. Kalluri, X. Liang, T. Fujino, and A. Samuga: Genomics of cellulose biosynthesis in poplars. New Phytologist 164: 53-61, 2004.

 

BOOK CHAPTERS

  1. Tsai C-J, Ranjan P, DiFazio SP, Tuskan GA and Johnson V (2009) Poplar Genome Microarrays. In: Joshi CP and DiFazio SP (eds), Genetics, Genomics and Breeding of Crop Plants: Poplar. Science Publishers, Enfield, New Hampshire (in press).
  2. Stewart, C. N., Jr.,  Y. Peng, L. G. Abercrombie, M. D. Halfhill, M. R. Rao, P. Ranjan,  J. Hu, R. D. Sammons, G. R. Heck, P. J. Tranel, J. S. Yuan 2010. Genomics of glyphosate resistance. Pp in V. Nandula (ed). Glyphosate Resistance in Weeds. Wiley-Blackwell.